Software:
Relion:
http://www2.mrc-lmb.cam.ac.uk/relion
Eman:
http://blake.bcm.edu/emanwiki/EMAN2
Gctf / Gautomatch:
http://www.mrc-lmb.cam.ac.uk/kzhang
Frealign:
http://emlab.rose2.brandeis.edu/frealign
Data collection、Post-processing and more software summary websites:
http://www.emdatabank.org/emsoftware.html
https://en.wikibooks.org/wiki/Software_Tools_For_Molecular_Microscopy